- Gunadi, Ryantono, F., Sethi, R., Marcellus, Kalim, A.S., Imelda, P., Melati, D., Simanjaya, S., Widitjiarso, W., Pitaka, R.T. and Arfian, N., 2021. Effect of semaphorin 3C gene variants in multifactorial Hirschsprung disease. Journal of International Medical Research, 49(2), p.0300060520987789.
- Riawati, T., Indrarto, W., Fauzi, A.R. Widitjiarso, W., and Gunadi, 2021. Various radiological findings in patients with COVID-19: A case series. Annals of Medicine and Surgery.
- Gunadi, Makkadafi, M., Fauzi, A.R., Praja, A. and Athollah, K., 2021. Emergency high ligation in a suspected COVID-19 pediatric patient with incarcerated inguinal hernia: A case report. Annals of Medicine and Surgery, 62, pp.261-264.
- Gunadi, Balela, N., Kalim, A.S., Widitjiarso, W., Fahri, F., Tedja, A.K., Purnomo, E., Dwihantoro, A., Agustriani, N. and Makhmudi, A., 2020. The COVID-19 Pandemic Impact on Pediatric Surgery Residency Programs.
- Poerwosusanta, Gunadi, H., Noor, Z., Oktaviyanti, I.K., Mintaroem, K., Pardjianto, B., Widodo, M.A. and Widjajanto, E., 2020. The effect of laparoscopy on mast cell degranulation and mesothelium thickness in rats. BMC surgery, 20(1), pp.1-10.
- Haikal, Z., Dwihantoro, A., Gunarti, H., and Gunadi, 2020. Accuracy of transition zone in contrast enema to predict intraoperative aganglionosis level in patients with Hirschsprung disease. BMC research notes, 13(1), pp.1-4.
- Gabriela, G.C., Geometri, E.T., Santoso, G.E., Athollah, K., Fauzi, A.R., Hastuti, J., and Gunadi, 2020. Long-term growth outcomes in children with Hirschsprung disease after definitive surgery: A cross-sectional study. Annals of Medicine and Surgery, 59, pp.176-179.
- Trisnawati, I., El Khair, R., Puspitarani, D.A. Fauzi, A.R., and Gunadi, 2020. Prolonged nucleic acid conversion and false-negative RT-PCR results in patients with COVID-19: A case series. Annals of Medicine and Surgery, 59, pp.224-228.
- Gani, M., Fauzi, A.R., Yuliyanti, R.E., Inggriani, M.P., Nugroho, B., Agustiningsih, D., and Gunadi, 2020. Possible silent hypoxemia in a COVID-19 patient: A case report. Annals of Medicine and Surgery, 60, pp.583-586.
- Yuri, P., Gunadi, Lestari, R.P., Fardilla, F.P., Setyaningsih, W.A.W., Arfian, N. and Dachlan, I., 2020. The impact of COL1A1 and COL6A1 expression on hypospadias and penile curvature severity. BMC urology, 20(1), pp.1-5.
- Sofii, I., Dipoyono, W., Prima, H., Sari, Y.M., Fauzi, A.R., and Gunadi, 2020. The effect of different suturing materials for abdominal fascia wound closure on the collagen I/III expression ratio in rats. Annals of Medicine and Surgery, 60, pp.106-109.
- Prima, H., Sofii, I., Fauzi, A.R., Dachlan, I., and Gunadi, 2020. The impact of different suturing techniques for abdominal fascia closure on the Interleukin-6 expressions in Rattus norvegicus. BMC Research Notes, 13(1), pp.1-4.
- Gunadi, Wibawa, H., Hakim, M.S., Daniwijaya, E.W., Rizki, L.P., Supriyati, E., Nugrahaningsih, D.A.A., Iskandar, K., Anggorowati, N., Kalim, A.S., Puspitarani, D.A. and Athollah, K., 2020. Full-length genome characterization and phylogenetic analysis of SARS-CoV-2 virus strains from Yogyakarta and Central Java, Indonesia. PeerJ, 8, p.e10575.
- Sofii, I., Upa, A.F.P., Gunadi, 2020. Giant diverticulum of the transverse colon mimicking gastrocolic fistula: A case report. International Journal of Surgery Case Reports, 77, pp.809-812.
- Riawati, T., Indrarto, W., Fauzi, A.R., Gunadi, 2020. Various radiological findings in Indonesian patients with COVID-19: a case series.
- Gunadi, Fauzi, A.R., Melati, D., Siahaan, E.S.E.D., Daryanto, E., Rusmawatiningtyas, D. and Damayanti, W., 2020. Acquired choledochal cyst following intraabdominal tumor surgical excision: A case report. Annals of Medicine and Surgery, 57, pp.270-273.
- Gunadi, Balela, N., Fauzi, A.R. and Dwihantoro, A., 2020. Eventration of right diaphragm with an intrathoracic ectopic kidney: A case report. Annals of Medicine and Surgery, 57, pp.179-182.
- Gunadi, Munandar, M.A., Fauzi, A.R., Simanjaya, S. and Damayanti, W., 2020. Gastric stricture following corrosive agent ingestion: A case report. International Journal of Surgery Case Reports, 75, pp.539-542.
- Saysoo, M.R., Dewi, F.S.T., Gunadi, 2020. Quality of life of patients with Hirschsprung disease after Duhamel and Soave pull-through procedures: A mixed-methods sequential explanatory cohort study. Annals of Medicine and Surgery, 56, pp.34-37.
- Gunadi, Oktavian, A. and Fauzi, A.R., 2020. Rectosigmoid perforation in an anorectal malformation neonate and perineal fistula. Journal of Pediatric Surgery Case Reports, 59, p.101525.
- Makrufardi, F., Arifin, D.N., Afandy, D., Yulianda, D. Dwihantoro, A., Gunadi, 2020. Anorectal malformation patients’ outcomes after definitive surgery using Krickenbeck classification: A cross-sectional study. Heliyon, 6(2), p.e03435.
- Gunadi, Kalim, A.S., Budi, N.Y.P., Hafiq, H.M., Maharani, A., Febrianti, M., Ryantono, F., Yulianda, D., Iskandar, K. and Veltman, J.A., 2020. Aberrant expressions and variant screening of SEMA3D in Indonesian Hirschsprung patients. Frontiers in pediatrics, 8, p.60.
- Purnomo, E., Nugrahaningsih, D.A.A., Agustriani, N., and Gunadi, 2020. Comparison of metamizole and paracetamol effects on colonic anastomosis and fibroblast activities in Wistar rats. BMC Pharmacology and Toxicology, 21(1), pp.1-9.
- Poerwosusanta, H., Gunadi, Oktaviyanti, I.K., Kania, N. and Noor, Z., 2020. Laparoscopic procedures impact on mast cell mediators, extracellular matrix and adhesion scoring system in rats. Annals of Medicine and Surgery, 58, pp.102-106.
- Makhmudi, A., Wirohadidjojo, Y. W., Gahara, E., Noor, H. Z., Sunardi, M., Mahmudah, N. A., & Kalim, A. S. (2020). A novel wound healing accelerator: Effect of vitreous gel of cow eyeball on a chronic wound model. The Medical Journal of Malaysia, 75(6), 698-704.
- Gunadi, Y.I., Paramita, V.M.W., Fauzi, A.R., Dwihantoro, A. and Makhmudi, A., 2020. The Impact of COVID-19 pandemic on pediatric surgery practice: A cross-sectional study. Annals of Medicine and Surgery, 59, p.96.
- Ningtyas, H.H., Simanjaya, S., Febrianti, M., Ryantono, F. and Makhmudi, A., 2020. Comparison of pre-operative Hirschsprung-associated enterocolitis using classical criteria and Delphi method: A diagnostic study. Annals of Medicine and Surgery, 51, pp.37-40.
- Qisthi, S.A., Saragih, D.S.P., Sutowo, D.W., Sirait, D.N., Imelda, P., Kencana, S.M.S. and Makhmudi, A., 2020. Prognostic Factors for Survival of Patients with Biliary Atresia Following Kasai Surgery. Kobe J. Med. Sci, 66(2), pp.E56-E60.
- Makhmudi, A., Supanji, R. and Putra, B.P., 2020. The effect of APTR, Fn14 and CD133 expressions on liver fibrosis in biliary atresia patients. Pediatric surgery international, 36(1), pp.75-79.
- Sirait, D.N., Budiarti, L.R., Paramita, V.M.W., Fauzi, A.R., Ryantono, F., Afandy, D., Yoshuantari, N., Rinonce, H.T. and Makhmudi, A., 2020. Histopathological findings for prediction of liver cirrhosis and survival in biliary atresia patients after Kasai procedure. Diagnostic Pathology, 15(1), pp.1-8.
- Noor, H.Z. and Makhmudi, A., 2020. The impact of serum total bilirubin, alanine transaminase and gamma-glutamyl transferase on survival of biliary atresia patients following Kasai procedure. The Medical Journal of Malaysia, 75(Suppl 1), pp.1-4.
- Sukarelawanto, A.V.R., Ritana, A., Balela, N., Putri, W.J.K., Sirait, D.N., Paramita, V.M.W., Sasmita, A.P., Dwihantoro, A. and Makhmudi, A., 2020. Postoperative enterocolitis assessment using two different cut-off values in the HAEC score in Hirschsprung patients undergoing Duhamel and Soave pull-through. BMC pediatrics, 20(1), pp.1-6.
- Yulianda, D., Sati, A.I. and Makhmudi, A., 2019, December. Risk factors of preoperative Hirschsprung-associated enterocolitis. In BMC proceedings(Vol. 13, No. 11, pp. 1-5). BioMed Central.
- Kalim, A.S., Liana, E., Fauzi, A.R., Sirait, D.N., Afandy, D., Kencana, S.M.S., Purnomo, E., Iskandar, K. and Makhmudi, A., 2019. Aberrant UBR4 expressions in Hirschsprung disease patients. BMC pediatrics, 19(1), pp.1-5.
- Budi, N.Y.P., Kalim, A.S., Santiko, W., Musthofa, F.D., Iskandar, K. and Makhmudi, A., 2019. Aberrant expressions of miRNA-206 target, FN1, in multifactorial Hirschsprung disease. Orphanet journal of rare diseases, 14(1), pp.1-6.
- Makhmudi, A. and Kalim, A.S., 2019. microRNA-21 expressions impact on liver fibrosis in biliary atresia patients. BMC research notes, 12(1), p.189.
- Iskandar, K., Makhmudi, A. and Kapoor, A., 2019. Combined genetic effects of RET and NRG1 susceptibility variants on multifactorial Hirschsprung disease in Indonesia. journal of surgical research, 233, pp.96-99.
- Prasetya, D., and Gunadi, 2019. Accuracy of neutrophil lymphocyte ratio for diagnosis of acute appendicitis in children: a diagnostic study. Annals of Medicine and Surgery, 48, pp.35-38.
- Gunadi, Kashogi, G., Prasetya, D., Fauzi, A.R., Daryanto, E. and Dwihantoro, A., 2019. Pediatric patients with mesenteric cystic lymphangioma: A case series. International journal of surgery case reports, 64, pp.89-93.
- Gunadi, Kaneshiro, M., Okamoto, T., Sonoda, M., Ogawa, E., Okajima, H. and Uemoto, S., 2019. Outcomes of liver transplantation for Alagille syndrome after Kasai portoenterostomy: Alagille Syndrome with agenesis of extrahepatic bile ducts at porta hepatis. Journal of pediatric surgery, 54(11), pp.2387-2391.
- Gunadi, Kaneshiro, M., Okamoto, T., Sonoda, M., Ogawa, E., Okajima, H. and Uemoto, S., 2019. Outcomes of liver transplantation for Alagille syndrome after Kasai portoenterostomy: Alagille Syndrome with agenesis of extrahepatic bile ducts at porta hepatis. Journal of pediatric surgery, 54(11), pp.2387-2391.
- Iskandar, K., Dwianingsih, E.K., Pratiwi, L., Kalim, A.S., Mardhiah, H., Putranti, A.H., Nurputra, D.K., Triono, A., Herini, E.S., Malueka, R.G. Gunadi, and San Lai, P., 2019. The analysis of DMD gene deletions by multiplex PCR in Indonesian DMD/BMD patients: The era of personalized medicine. BMC research notes, 12(1), pp.1-6.
- Gunadi, Kalim, A., Budi, N., Arfian, N., Purnomo, E. and Iskandar, K., 2019, October. The impact ofNRG1expressions and methylation on multifactorial Hirschsprung disease in Indonesia. In EUROPEAN JOURNAL OF HUMAN GENETICS(Vol. 27, pp. 1253-1254). MACMILLAN BUILDING, 4 CRINAN ST, LONDON N1 9XW, ENGLAND: NATURE PUBLISHING GROUP.
- Gunawan, T.A., Widiyanto, G., Yuanita, A., Mulyani, N.S. and Makhmudi, A., 2018. Liver transplant score for prediction of biliary atresia patients’ survival following Kasai procedure. BMC research notes, 11(1), pp.1-5.
- Budi, N.Y.P., Sethi, R., Fauzi, A.R., Kalim, A.S., Indrawan, T., Iskandar, K., Makhmudi, A., Adrianto, I. and San, L.P., 2018. NRG1 variant effects in patients with Hirschsprung disease. BMC pediatrics, 18(1), pp.1-9.
- Parahita, I.G. and Makhmudi, A., 2018. Comparison of Hirschsprung-associated enterocolitis following Soave and Duhamel procedures. Journal of pediatric surgery, 53(7), pp.1351-1354.
- Gunadi, Karina, S.M. and Dwihantoro, A., 2018. Outcomes in patients with Hirschsprung disease following definitive surgery. BMC research notes, 11(1), pp.1-5.
- Gunadi, Sunardi, M., Budi, N.Y.P., Kalim, A.S., Iskandar, K. and Dwihantoro, A., 2018. The impact of down-regulated SK3 expressions on Hirschsprung disease. BMC medical genetics, 19(1), pp.1-5.
- Herini, E.S., Gunadi, Triono, A., Wirastuti, F., Iskandar, K., Mardin, N. and Soenarto, Y., 2018. Clinical profile of congenital rubella syndrome in Yogyakarta, Indonesia. Pediatrics International, 60(2), pp.168-172.
- Widyasari, A., Pravitasari, W.A. Dwihantoro, A., and Gunadi, 2018. Functional outcomes in Hirschsprung disease patients after transabdominal Soave and Duhamel procedures. BMC gastroenterology, 18(1), pp.1-6.
- Makhmudi, A., Aryandono, T., Sudiharto, P. and Heij, H.A., 2017. ICAM1 K469E Polymorphism Effect in Gastroschisis Patients. International Surgery, 102(7-8), pp.362-366.
- Herini ES, Gunadi, Triono A, Mulyadi AW, Mardin N, Rusipah, et al. (2017) Hospital-based surveillance of congenital rubella syndrome in Indonesia. European Journal of Pediatrics, doi: 10.1007/s00431-017-2853-8
- Setiadi, J.A., Dwihantoro, A., Iskandar, K. Heriyanto, D.S., Gunadi, 2017. The utility of the hematoxylin and eosin staining in patients with suspected Hirschsprung disease. BMC surgery, 17(1), pp.1-5.
- Makhmudi, A., Sadewa, A.H., Aryandono, T., Chatterjee, S., Heij, H.A. and Gunadi, 2016. Effects of MTHFR c. 677C> T, F2 c. 20210G> A and F5 Leiden polymorphisms in gastroschisis. Journal of Investigative Surgery, 29(2), pp.88-92.
- Makhmudi, A. and Agustriani, N., 2016. Effects of SEMA3 polymorphisms in Hirschsprung disease patients. Pediatric surgery international, 32(11), pp.1025-1028.
- Gunadi, Dwihantoro A, Iskandar K, Makhmudi A, Rochadi. (2016). Accuracy of PCR-RFLP for RET rs2435357 genotyping as Hirschsprung risk. Journal of Surgical Research, 203:91-94.
- Makhmudi A, Sadewa AH, Aryandono T, Chatterjee S, Heij HA, Gunadi. (2016). Effects of MTHFR c.677C>T, F2 c.20210G>A and F5 Leiden Polymorphisms in Gastroschisis. Journal of Investigative Surgery, 29:88-92.
- Andi Dwihantoro, Rochadi. Microbiological profile and antimicrobial susceptibility in children with perforated appendicitis at Dr. Sardjito General Hospital, Yogyakarta. Journal of the Medical Sciences, 2016;48(1):35-44.
- Candra Adipurwadi, Akhmad Makhmudi. Correlation between clinical findings and patient’s survival rate in congenital duodenal obstruction. Journal of the Medical Sciences, 2016;48(4):193-199.
- Gunadi, Kapoor A, Ling AY, Rochadi, Makhmudi A, Herini ES, Sosa MX, Chatterjee S, Chakravarti A. (2014). Effects of RET and NRG1 polymorphisms in Indonesian patients with Hirschsprung disease. Journal of Pediatric Surgery, 49:1614-1618.
- Rochadi, Sadewa AH, Haryana SM, Gunadi. (2014). Effect of RET c.2307T.G Polymorphism on the Outcomes of Posterior Sagittal Neurectomy for Hirschsprung Disease Procedure in Indonesian Population. International Surgery, 99:802-806.
- Satomi Nadanaka, Eko Purnomo, Naoko T, Jun-ichi T, Hiroshi K. Glycobiology and Extracellular Matrices: Heparan Sulfate Containing Unsubstituted Glucosamine Residues: BIOSYNTHESIS AND HEPARANASE-INHIBITORY ACTIVITY. (2014). The Journal of Biological Chemistry, 2014, 289:15231-15243.
- Eko Purnomo, Noriaki Em Dwi Aris AN, Kazuhiko N, Keiko Y, Susi H, Satomi N, Hiroshi K, Ken-ichi H. (2013). Glycosaminoglycan Overproduction in the Aorta Increases Aortic Calcification in Murine Chronic Kidney Disease. Journal American Heart Association, 2013;2:e000405.
- Dwi Aris AN, Noriaki E, Nicholas VZ, Eko Purnomo, Keiko Y, Kazuhiko N, Masao D, Hitoshi O, Ken-ichi H. (2013). Chronic Hyperaldosteronism in chryptochrome-null mice induces high-salt- and blood pressure- independent kidney damage in mice. Hypertension Research (2014), 37, 202-209.
- Kumamoto T, Toma K, Gunadi, McKenna WL, Kasukawa T, Katzman S, Chen B, Hanashima C. (2013). Foxg1 Coordinates the Switch from Nonradially to Radially Migrating Glutamatergic Subtypes in the Neocortex through Spatiotemporal Repression. Cell Reports, 3:931-45.
- Marini M, Sasongko TH, Watihayati MS, Atif AB, Hayati F, Gunadi, Zabidi-Hussin ZA, Ravichandran M, Nishio H, Zilfalil BA (2012) Allele-specific PCR for a cost-effective & time-efficient diagnostic screening of spinal muscular atrophy. Indian Journal of Medical Research, 135:31-5.
- Harahap IS, Saito T, San LP, Sasaki N, Gunadi, Nurputra DK, Yusoff S, Yamamoto T, Morikawa S, Nishimura N, Lee MJ, Takeshima Y, Matsuo M, Nishio H. (2012) Valproic acid increases SMN2 expression and modulates SF2/ASF and hnRNPA1 expression in SMA fibroblast cell lines. Brain & Development, 34:213-22.
- Sasongko TH, Gunadi, Zilfalil BA, Zabidi-Hussin Z. (2011) Deletion analysis of SMN1 exon 7 alone may be necessary and sufficient for the diagnosis of Spinal Muscular Atrophy. Journal of Neurogenetics, 25:15-6.
- Harahap IS, Sasaki N, Gunadi, Yusoff S, Lee MJ, Morikawa S, Nishimura N, Sasaki T, Usuki S, Hirai M, Ohta M, Takaoka Y, Nishimoto T, Nishio H. (2011) Herbal medicine containing Licorice may be contraindicated for a patient with an HSD11B2 mutation. Evidence-based Complementary and Alternative Medicine, 2011:646540.
- Herini ES, Gunadi, Harahap IS, Yusoff S, Morikawa S, Patria SY, Nishimura N, Sunartini, Sutaryo, Takada S, Matsuo M, Nishio H. (2010) Generalized Epilepsy with Febrile Seizures plus (GEFS+) spectrum: Clinical manifestations and SCN1A mutations in Indonesian patients. Epilepsy Research, 90:132-9.
- Yusoff S, Takeuchi A, Ashi C, Tsukada M, Ma’amor NH, Alwi Zilfalil B, Mohd Yusoff N, Nakamura T, Hirai M, Harahap SI, Gunadi, Lee MJ, Nishimura N, Takaoka Y, Morikawa S, Morioka I, Yokoyama N, Matsuo M, Nishio H, van Rostenberghe H. (2010) A polymorphic mutation, c.-3279T>G, in the UGT1A1 promoter is a risk factor for Neonatal Jaundice in the Malay population. Pediatric Research, 67:401-6.
- Herini ES, Gunadi, van Kempen MJ, Yusoff S, Sutaryo, Sunartini, et al. (2010) Novel SCN1A mutations in Indonesian patients with Severe Myoclonic Epilepsy in Infancy. Pediatrics International, 52:234–9.
- Sasongko TH, Gunadi, Yusoff S, Atif AB, Fatemeh H, Rani A, et al. (2010) Screening of the LIX1 gene in Japanese and Malaysian patients with SMA and/or SMA-like disorder. Brain & Development, 32:385–9.
- Gunadi, Miura K, Ohta M, Sugano A, Lee MJ, Sato Y, et al. (2009) Two novel mutations in the ED1 gene in Japanese families with X-linked hypohidrotic ectodermal dysplasia. Pediatric Research, 65:453-7.
- Irimura S, Kitamura K, Kato N, Saiki K, Takeuchi A, Gunadi, et al. (2009) HnRNP C1/C2 may regulate exon 7 splicing in the Spinal Muscular Atrophy gene SMN1. Kobe Journal of Medical Sciences, 54:E227-36.
- Gunadi, Sasongko TH, Yusoff S, Lee MJ, Nishioka E, Matsuo M, et al. (2008) Hypomutability at the polyadenine tract in SMN intron 3 shows the invariability of the a-SMN protein structure. Annals of Human Genetics, 72:288-91.
- Tran VK, Sasongko TH, Hong DD, Hoan NT, Dung VC, Lee MJ, Gunadi, et al. (2008) SMN2 and NAIP gene dosages in Vietnamese patients with spinal muscular atrophy. Pediatrics International, 50:346-51.
- Sadewa AH, Sasongko TH, Gunadi, Lee MJ, Daikoku K, Yamamoto A, Yamasaki T, Tanaka S, Matsuo M, Nishio H. (2008) A germ-line mutation of KCNQ2, p.R213W, in a Japanese family with BFNC. Pediatrics International 50:167-71.
- Syampurnawati M, Tatsumi E, Ardianto B, Takenokuchi M, Nakamachi Y, Kawano S, Kumagai S, Saigo K, Matsui T, Takahashi T, Nagai K, Gunadi, Nishio H, Yabe H, Kondo S, Hayashi Y. (2008) DR negativity is a distinctive feature of M1/M2 AML cases with NPM1 mutation. Leukemia Research, 32:1141-3.
- Sasongko TH, Wataya-Kaneda M, Koterazawa K, Gunadi, Yusoff S, Harahap IS, et al. (2008) Novel mutations in 21 patients with Tuberous Sclerosis Complex and variation of tandem splice-acceptor sites in TSC1 exon 14. Kobe Journal of Medical Sciences, 54:E73-81.
- Kotani T, Sutomo R, Sasongko TH, Sadewa AH, Gunadi, Minato T, Fujii E, Endo S, Lee MJ, Ayaki H, Harada Y, Matsuo M, Nishio H. (2007) A novel mutation at the N-terminal of SMN Tudor domain inhibits its interaction with target proteins. Journal of Neurology, 254:624-30.
- Sasongko TH, Sadewa AH, Gunadi, Lee MJ, Koterazawa K, Nishio H. (2007) Nonsense mutations of the ZFHX1B gene in two Japanese girls with Mowat-Wilson syndrome. Kobe Journal of Medical Sciences, 53:157-62.